Permission denied execution aborted

salehmeiabadisalehmeiabadi
in DualSPHysics v5.0

Hi there

I am trying to run DualSPHysics on the lab computers from home.

I face with the following problem upon hitting enter:

Untitled.png

Could you please advise me how to solve the problem.

Thanks in advance for your help and support.

Comments

  • Asalih3dAsalih3d

    You need to allow permissions. Look at the "permissions.sh" file in DualSPHysics install and run it. You might have to install dos2unix, google it.


    Kind regards

  • AlexAlex

    ./ permissions.sh will solve the problem

  • salehmeiabadisalehmeiabadi
    edited November 2020

    Thank you so much for your response.

    So it has nothing to do with permission to GenCase?

    The xCasePoiseuilleNNlinux64CPU.sh already has permissions to read and execute -rwxrwxr-x for others

  • sph_tudelft_nlsph_tudelft_nl

    @salehmeiabadi

    https://forums.dual.sphysics.org/discussion/comment/4025#Comment_4025

    Maybe a late addition. xCasePoiseuilleNNlinux64CPU.sh is a script launching the DualSPHysics utilities as child processes: these must become executable files as well. Personally I use a chmod 774 ... command, which leaves the files read-only for the "others".

    Obviously perhaps, also chpermission.sh (its name in 5.0.155) needs to have permissions set manually by the user.

  • salehmeiabadisalehmeiabadi

    I appreciate your (late) addition.

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Debug Trace

Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hi ...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(197): Gdn_Format::to('[{"insert":"Hi ...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#6 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#7 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#8 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#9 {main}
Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hi ...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Hi ...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/discussion.php(89): formatBody(Object(stdClass))
#6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(31): include('/var/www/forums...')
#7 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...')
#8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false)
#9 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender()
#10 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array)
#11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#15 {main}
Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"You...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"You...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass))
#6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 1)
#7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...')
#8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...')
#9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false)
#10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender()
#11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array)
#12 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#14 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#15 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#16 {main}
Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":".\\/...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":".\\/...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass))
#6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 2)
#7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...')
#8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...')
#9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false)
#10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender()
#11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array)
#12 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#14 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#15 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#16 {main}
Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Tha...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Tha...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass))
#6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 3)
#7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...')
#8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...')
#9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false)
#10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender()
#11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array)
#12 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#14 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#15 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#16 {main}
Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":{"me...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":{"me...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass))
#6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 4)
#7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...')
#8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...')
#9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false)
#10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender()
#11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array)
#12 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#14 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#15 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#16 {main}
Notice 
rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead.

#0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array)
#1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384)
#2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...')
#3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"I a...')
#4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"I a...', 'Rich')
#5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass))
#6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 5)
#7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...')
#8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...')
#9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false)
#10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender()
#11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array)
#12 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1902, 'x', 'p1')
#13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('4022')
#14 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array)
#15 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch()
#16 {main}

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