Permission denied execution aborted

salehmeiabadi · November 2020

Hi there

I am trying to run DualSPHysics on the lab computers from home.

I face with the following problem upon hitting enter:

Could you please advise me how to solve the problem.

Thanks in advance for your help and support.

Asalih3d · November 2020

You need to allow permissions. Look at the "permissions.sh" file in DualSPHysics install and run it. You might have to install dos2unix, google it.

Kind regards

Alex · November 2020

./ permissions.sh will solve the problem

salehmeiabadi · November 2020

Thank you so much for your response.

So it has nothing to do with permission to GenCase?

The xCasePoiseuilleNNlinux64CPU.sh already has permissions to read and execute -rwxrwxr-x for others

sph_tudelft_nl · November 2020

@salehmeiabadi

https://forums.dual.sphysics.org/discussion/comment/4025#Comment_4025

Maybe a late addition. xCasePoiseuilleNNlinux64CPU.sh is a script launching the DualSPHysics utilities as child processes: these must become executable files as well. Personally I use a chmod 774 ... command, which leaves the files read-only for the "others".

Obviously perhaps, also chpermission.sh (its name in 5.0.155) needs to have permissions set manually by the user.

salehmeiabadi · November 2020

I appreciate your (late) addition.

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Notice	rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hi ...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Hi ...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/discussion.php(89): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(31): include('/var/www/forums...') #7 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #9 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #10 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #11 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1902', 'permission-deni...', '') #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #13 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #14 {main}
Notice	rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"You...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"You...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 1) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1902', 'permission-deni...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main}
Notice	rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":".\\/...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":".\\/...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 2) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1902', 'permission-deni...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main}
Notice	rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Tha...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Tha...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 3) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1902', 'permission-deni...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main}
Notice	rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":{"me...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":{"me...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 4) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1902', 'permission-deni...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main}
Notice	rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"I a...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"I a...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 5) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1902', 'permission-deni...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main}

Permission denied execution aborted

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