Cannot evaluate floatinginfo for restarted simulation
Hello,
I am restarting floating simulation case from Part[XXXX] but there is a problem that the floatinginfo output file cant be generated, showing :
LoadDsphConfig> .../bin/linux/DsphConfig.xml
LoadFtInfo> Nonlinear_3DTest_restart_out/data/PartFloat.fbi4
Loading floating data...
FtCount: 1
PartCount: 792
Computing motion of floating bodies...
*** Exception (JBinaryData::OpenFileStructure) at JBinaryData.cpp:1624
Text: Cannot open the file.
File: Nonlinear_3DTest_restart_out/data/Part_0000.bi4
Does anyone know how to deal with this problem?
Additionally, the force and vtk computations are working. Also, I have been able to successfully use this in the past (in v5.0 itself).
export name=CASEFreeDecay
export dirout=${name}_restart_out
export diroutdata=${dirout}/data
# "executables" are renamed and called from their directory
# "executables" are renamed and called from their directory
export dirbin=/scratch/user/xyz/bin/linux
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${dirbin}
export gencase="${dirbin}/GenCase_linux64"
export dualsphysicscpu="${dirbin}/DualSPHysics5.0CPU_linux64"
export dualsphysicsgpu="${dirbin}/DualSPHysics5.0_linux64"
export boundaryvtk="${dirbin}/BoundaryVTK_linux64"
export partvtk="${dirbin}/PartVTK_linux64"
export partvtkout="${dirbin}/PartVTKOut_linux64"
export measuretool="${dirbin}/MeasureTool_linux64"
export computeforces="${dirbin}/ComputeForces_linux64"
export isosurface="${dirbin}/IsoSurface_linux64"
export flowtool="${dirbin}/FlowTool_linux64"
export floatinginfo="${dirbin}/FloatingInfo_linux64"
export dirout2=${dirout}/floatinginfo
${floatinginfo} -dirin ${diroutdata} -onlymk:61 -savedata ${dirout2}/RAO
if [ $? -ne 0 ] ; then fail; fi
This is my job file
Debug Trace
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hel...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(197): Gdn_Format::to('[{"insert":"Hel...', 'Rich') #5 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('2110', 'cannot-evaluate...', '') #6 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #7 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #8 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hel...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Hel...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/discussion.php(89): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(31): include('/var/www/forums...') #7 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #9 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #10 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #11 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('2110', 'cannot-evaluate...', '') #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #13 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #14 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"The...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"The...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 1) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('2110', 'cannot-evaluate...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":{"em...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":{"em...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 2) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('2110', 'cannot-evaluate...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
Comments
The error says that the file Part_0000.bi4 is not in the folder "Nonlinear_3DTest_restart_out/data"
Hi Alex,
If I restart a simulation at Part XXXX, wouldn't the data folder only contain Part files from XXXX?