How to choose number of CPU Cores
Hi there
We have 8 cores on a node in our Linux machine and DualSPHysics uses all 8 cores to run a simulation.
What if I want to use for example 4 cores or 2 cores?
How can I set the number of cores which will be used by machine?
Thanks a lot for any help.
Debug Trace
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hi ...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Hi ...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/discussion.php(89): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(31): include('/var/www/forums...') #7 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #9 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #10 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #11 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1963', 'how-to-choose-n...', '') #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #13 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #14 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hi\\...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Hi\\...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 1) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1963', 'how-to-choose-n...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Tha...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Tha...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 2) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1963', 'how-to-choose-n...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Tha...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Tha...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 3) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1963', 'how-to-choose-n...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Tha...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Tha...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 4) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1963', 'how-to-choose-n...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
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rich is deprecated. Use FormatService::renderHtml($content, Formats\RichFormat::FORMAT_KEY) instead. #0 [internal function]: gdn_ErrorHandler(16384, 'rich is depreca...', '/var/www/forums...', 950, Array) #1 /var/www/forums-dual-sphysics-org/library/core/functions.general.php(950): trigger_error('rich is depreca...', 16384) #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1729): deprecated('rich', 'FormatService::...') #3 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::rich('[{"insert":"Hel...') #4 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('[{"insert":"Hel...', 'Rich') #5 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #6 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 5) #7 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #8 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #9 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #10 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #11 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #12 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->index('1963', 'how-to-choose-n...', '') #13 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #14 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #15 {main} |
Comments
Hi
Look at:
help\DualSPHysics5.0_Help.out
And its specified entry, "-ompthreads":
Kind regards
Thanks alot
Thank you so much for your response.
I could not find -ompthreads in the execution parameters in Case_Def.xml file.
Could you please let me know where I should specify number of threads?
King regards
That is only available in the command line, not in the XML
Regards
Hello
I just wanted to share my finding on how to request a number of cores for a job using SBATCH on a cluster.
When submitting a job you can request the number of cores by a simple script like this:
#!/bin/bash
#SBATCH --account= ----------------
#SBATCH --time=00:60:00
#SBATCH --cpus-per-task=36
export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
cd /home/saleh85/DualSPHysics_v5.0/examples/mphase_nnewtonian/02_Poiseuille
./xCasePoiseuilleNN_linux64_CPU.sh
Here I requested 36 cores.
Good luck