IsoSurface: Segmentation Fault
On creating surface vtk files from binary files (each of 467 MB), ISOSURFACE stops with Segmentation Fault. What can be the reasons for this error. I saw a thread where this question was posted but no one replied a solution.
Debug Trace
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Cannot assign an empty string to a string offset #0 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1203): gdn_ErrorHandler(2, 'Cannot assign a...', '/var/www/forums...', 1203, Array) #1 /var/www/forums-dual-sphysics-org/library/core/class.format.php(958): Gdn_Format::formatMentionsCallback('') #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1292): Gdn_Format::tagContent('@Alex Please he...', 'Gdn_Format::for...') #3 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/Html/HtmlEnhancer.php(59): Gdn_Format::mentions('@Alex Please he...') #4 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/Formats/HtmlFormat.php(74): Vanilla\Formatting\Html\HtmlEnhancer->enhance('@Alex Please he...') #5 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/FormatService.php(34): Vanilla\Formatting\Formats\HtmlFormat->renderHtml('@Alex Please he...') #6 /var/www/forums-dual-sphysics-org/library/core/class.format.php(769): Vanilla\Formatting\FormatService->renderHTML('@Alex Please he...', 'html') #7 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::html('@Alex Please he...') #8 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('@Alex Please he...', 'Html') #9 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #10 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 1) #11 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #12 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #13 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #14 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #15 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #16 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1621, 'x', 'p1') #17 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('3020') #18 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #19 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #20 {main} |
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Cannot assign an empty string to a string offset #0 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1203): gdn_ErrorHandler(2, 'Cannot assign a...', '/var/www/forums...', 1203, Array) #1 /var/www/forums-dual-sphysics-org/library/core/class.format.php(958): Gdn_Format::formatMentionsCallback('') #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1292): Gdn_Format::tagContent('@Alex, urgently...', 'Gdn_Format::for...') #3 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/Html/HtmlEnhancer.php(59): Gdn_Format::mentions('@Alex, urgently...') #4 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/Formats/HtmlFormat.php(74): Vanilla\Formatting\Html\HtmlEnhancer->enhance('@Alex, urgently...') #5 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/FormatService.php(34): Vanilla\Formatting\Formats\HtmlFormat->renderHtml('@Alex, urgently...') #6 /var/www/forums-dual-sphysics-org/library/core/class.format.php(769): Vanilla\Formatting\FormatService->renderHTML('@Alex, urgently...', 'html') #7 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::html('@Alex, urgently...') #8 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('@Alex, urgently...', 'Html') #9 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #10 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 6) #11 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #12 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #13 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #14 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #15 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #16 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1621, 'x', 'p1') #17 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('3020') #18 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #19 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #20 {main} |
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Cannot assign an empty string to a string offset #0 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1203): gdn_ErrorHandler(2, 'Cannot assign a...', '/var/www/forums...', 1203, Array) #1 /var/www/forums-dual-sphysics-org/library/core/class.format.php(958): Gdn_Format::formatMentionsCallback('') #2 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1292): Gdn_Format::tagContent('@swaraj1112 can...', 'Gdn_Format::for...') #3 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/Html/HtmlEnhancer.php(59): Gdn_Format::mentions('@swaraj1112 can...') #4 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/Formats/HtmlFormat.php(74): Vanilla\Formatting\Html\HtmlEnhancer->enhance('@swaraj1112 can...') #5 /var/www/forums-dual-sphysics-org/library/Vanilla/Formatting/FormatService.php(34): Vanilla\Formatting\Formats\HtmlFormat->renderHtml('@swaraj1112 can...') #6 /var/www/forums-dual-sphysics-org/library/core/class.format.php(769): Vanilla\Formatting\FormatService->renderHTML('@swaraj1112 can...', 'html') #7 /var/www/forums-dual-sphysics-org/library/core/class.format.php(1479): Gdn_Format::html('@swaraj1112 can...') #8 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(24): Gdn_Format::to('@swaraj1112 can...', 'Html') #9 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/helper_functions.php(170): formatBody(Object(stdClass)) #10 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/comments.php(19): writeComment(Object(stdClass), Object(DiscussionController), Object(Gdn_Session), 8) #11 /var/www/forums-dual-sphysics-org/applications/vanilla/views/discussion/index.php(53): include('/var/www/forums...') #12 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(778): include('/var/www/forums...') #13 /var/www/forums-dual-sphysics-org/library/core/class.controller.php(1382): Gdn_Controller->fetchView('', false, false) #14 /var/www/forums-dual-sphysics-org/library/core/class.pluggable.php(217): Gdn_Controller->xRender() #15 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(310): Gdn_Pluggable->__call('render', Array) #16 /var/www/forums-dual-sphysics-org/applications/vanilla/controllers/class.discussioncontroller.php(402): DiscussionController->index(1621, 'x', 'p1') #17 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(862): DiscussionController->comment('3020') #18 /var/www/forums-dual-sphysics-org/library/core/class.dispatcher.php(279): Gdn_Dispatcher->dispatchController(Object(Gdn_Request), Array) #19 /var/www/forums-dual-sphysics-org/index.php(29): Gdn_Dispatcher->dispatch() #20 {main} |
Comments
are you using the latest version 4.4? do you have the problem with that version?
Also happy you resolved your issue.
Kind regards
Fluid Particles:14 mil
Fixed Particles: 1.2 mil
Simulation was done for 6 seconds. At first part generation was fast (in 15 mins) but later each part took 1 hour. Maybe there is auto time-stepping when convergence is not reached.
Hoping some day to get multi GPU support, would increase speed so much